Home
Keywords
News
Edit
History
Recent changes
New version:
Cuby4
documentation
is here
back to
Modules
cuby_scan
New name
Password
Show page
Syntax
{BACK:Modules} This module runs cuby calculation on a series of geometries. The geometries can be prepared by script [geometry_scan]. Input file should contain definition of the calculation, including the keyword ::job::. The default format of the series of geometries (a trajectory) is .xyz file. If the information in .xyz file is not enough for the calculation (example: calculation uses atom types that are stored in PDB format only), a template geometry in any [format|File formats] supported by cuby can be provided using commandline option '''-g'''. This template geometry is the updated with coordinates from the trajectory.
Password
Edit summary