Files

classes/CUBY.rb
classes/CUBY_error.rb
classes/algebra.rb
classes/atom.rb
classes/calculation.rb
classes/calculation_prepare_info.rb
classes/commandline.rb
classes/constants.rb
classes/coordinate.rb
classes/coordinate_ruby.rb
classes/coordinate_vector.rb
classes/cuby_commandline.rb
classes/cuby_config.rb
classes/cuby_log.rb
classes/distributed_calculation.rb
classes/driver_BFGS.rb
classes/driver_CG.rb
classes/driver_RFO.rb
classes/driver_dynamics.rb
classes/geometry.rb
classes/geometry_PDB.rb
classes/geometry_connectivity.rb
classes/geometry_read_write.rb
classes/geometry_rmsd.rb
classes/geometry_selections.rb
classes/geoopt_freezer.rb
classes/internal_coord.rb
classes/internal_coord_set.rb
classes/load_balancer.rb
classes/mod_combinatorics.rb
classes/mod_cuby_helpers.rb
classes/mod_deep_copy.rb
classes/mod_extend_math.rb
classes/mod_filename.rb
classes/mod_fragmentation.rb
classes/mod_func.rb
classes/mod_hessian.rb
classes/mod_hessian_estimate.rb
classes/mod_jacobian.rb
classes/optimizer.rb
classes/periodic_table.rb
classes/point_charge.rb
classes/point_charge_list.rb
classes/settings.rb
classes/system.rb
classes/trajectory.rb
classes/z-matrix.rb
classes/algebra/matrix_c_fixes.rb
classes/algebra/matrix_common.rb
classes/algebra/matrix_ruby.rb
classes/algebra/vector_common.rb
classes/algebra/vector_ruby.rb
classes/interfaces/amber.rb
classes/interfaces/counterpoise.rb
classes/interfaces/demon.rb
classes/interfaces/dftb.rb
classes/interfaces/dispersion.rb
classes/interfaces/electrostatics.rb
classes/interfaces/fragmented.rb
classes/interfaces/fragmented2.rb
classes/interfaces/gaussian.rb
classes/interfaces/h_bonds_pm6.rb
classes/interfaces/metainterface.rb
classes/interfaces/mfba.rb
classes/interfaces/qmmm.rb
classes/interfaces/restraints.rb
classes/interfaces/turbomole.rb
classes/interfaces/uff.rb
classes/interfaces/void.rb
classes/interfaces/water_ff.rb
classes/interfaces/waterball.rb